ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 15.00 78.95 0.07 100.0 MIR1271-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 268.00 1.62 1.33 100.0 SNORD100-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 45.00 0.27 0.22 100.0 SNORD100-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 13421.00 81.28 66.73 100.0 SNORD100-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1437.00 8.70 7.15 100.0 SNORD100-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2865.00 64.61 14.25 100.0 SNORD111B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 444.00 7.90 2.21 100.0 RNU2-36P-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 308.00 5.48 1.53 100.0 RNU2-36P-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 181775.00 97.22 903.82 98.47 SNORD19C-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 486.00 0.26 2.42 100.0 SNORD19C-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 4220.00 4.65 20.98 100.0 SNORD12B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 3755.00 4.14 18.67 100.0 SNORD12B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 77380.00 85.26 384.75 97.13 SNORD12B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 2.00 0.47 0.01 100.0 Y_RNA.609-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 108.00 44.63 0.54 100.0 Y_RNA.612-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 58189.00 98.58 289.33 99.93 SNORD71-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 157.00 0.27 0.78 100.0 SNORD71-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 102.00 0.17 0.51 100.0 SNORD71-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 2759.00 77.92 13.72 92.27 MIR194-2HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 723.00 20.42 3.59 61.95 MIR194-2HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 2631.00 29.04 13.08 100.0 LINC01783-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 45.00 97.83 0.22 100.0 RPS7P15-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1587.00 32.16 7.89 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 230.00 4.66 1.14 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 473.00 9.59 2.35 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)