ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 6.00 0.12 0.03 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1587.00 32.16 7.89 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 318.00 99.07 1.58 100.0 MRPL32-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 5.00 71.43 0.02 100.0 ENST00000436739 lncRNA esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 734.00 6.84 3.65 63.6 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1963.00 18.29 9.76 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2904.00 27.06 14.44 81.09 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 21.00 0.20 0.10 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 138.00 1.29 0.69 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 606.00 18.63 3.01 100.0 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 2037.00 62.64 10.13 88.14 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 5.00 12.20 0.02 100.0 SNHG14-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 41033.00 94.66 204.02 97.56 SNORD105B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1075.00 50.33 5.35 62.9 SNORD121B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 58891.00 97.28 292.82 99.2 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 54.00 0.09 0.27 100.0 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 13519.00 93.23 67.22 100.0 SNORD42B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 91.00 0.31 0.45 100.0 RNY4P25-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 694.00 73.59 3.45 100.0 SNORD121A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2222.00 74.39 11.05 92.28 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 616.00 20.62 3.06 63.18 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 24454.00 96.03 121.59 98.38 SNORD124-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 574.00 21.00 2.85 100.0 SNHG12-201 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1360.00 20.23 6.76 100.0 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1966.00 29.24 9.78 95.3 RPL3-212 retained intron esophagus squamous epithelium (Tissue)