ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 2124.00 17.53 10.56 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 245.00 2.02 1.22 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2743.00 22.64 13.64 78.75 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 2029.00 16.74 10.09 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 23.00 38.98 0.11 100.0 U3.17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2676.00 87.28 13.31 100.0 SNORD17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 1464.00 66.18 7.28 100.0 SNORD72-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 358.00 70.47 1.78 100.0 SNORD70B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 24196.00 83.37 120.31 91.17 RNY4P18-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 32465.00 82.72 161.42 100.0 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 5290.00 13.48 26.30 73.48 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 628.00 2.59 3.12 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 684.00 2.82 3.40 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 20976.00 86.50 104.30 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 834.00 3.44 4.15 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1366.00 56.61 6.79 65.83 SNORD70-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 33639.00 69.65 167.26 86.04 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 573.00 1.19 2.85 100.0 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 399.00 86.55 1.98 100.0 NDE1-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 26.00 41.27 0.13 100.0 MIR887-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 8.00 100.00 0.04 100.0 MIR889-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 1815.00 57.64 9.02 100.0 SNORD111-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2867.00 51.99 14.26 74.62 SNORD88A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 58.00 89.23 0.29 100.0 MIR548K-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 695.00 74.49 3.46 100.0 MIR320B2-201 miRNA esophagus squamous epithelium (Tissue)