ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 4308.00 21.32 21.25 75.18 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 70.00 0.35 0.35 100.0 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 4521.00 22.38 22.30 73.95 ENST00000651540 lncRNA spleen (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 2725.00 0.54 13.44 100.0 MIRLET7A1HG-203 lncRNA spleen (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 602.00 93.77 2.97 100.0 MEG8-225 lncRNA spleen (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 5066.00 52.69 24.99 100.0 SNHG29-232 lncRNA spleen (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 2619.00 27.24 12.92 100.0 SNHG29-232 lncRNA spleen (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 415.00 4.32 2.05 100.0 SNHG29-232 lncRNA spleen (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 9.00 0.09 0.04 100.0 SNHG29-232 lncRNA spleen (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 6.00 0.06 0.03 100.0 SNHG29-232 lncRNA spleen (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 83.00 4.61 0.41 100.0 SNHG14-234 lncRNA spleen (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 61.00 3.39 0.30 100.0 SNHG14-234 lncRNA spleen (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 435.00 2.42 2.15 100.0 ENST00000655317 lncRNA spleen (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 12646.00 70.36 62.39 92.47 ENST00000655317 lncRNA spleen (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 4216.00 1.22 20.80 93.46 LINC01962-202 lncRNA spleen (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 337951.00 98.04 1667.22 100.0 LINC01962-202 lncRNA spleen (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 326.00 0.09 1.61 100.0 LINC01962-202 lncRNA spleen (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 3632.00 91.30 17.92 100.0 MEG8-228 lncRNA spleen (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 1573.00 31.58 7.76 100.0 LIMD1-AS1-204 lncRNA spleen (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 648.00 13.01 3.20 96.29 LIMD1-AS1-204 lncRNA spleen (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 269.00 67.25 1.33 80.54 MIR99AHG-262 lncRNA spleen (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 30.00 7.50 0.15 100.0 MIR99AHG-262 lncRNA spleen (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 12.00 38.71 0.06 100.0 MIR9-2HG-225 lncRNA spleen (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 349.00 53.61 1.72 100.0 MEG8-233 lncRNA spleen (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 61.00 9.37 0.30 100.0 MEG8-233 lncRNA spleen (Tissue)