ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 426.00 0.07 2.10 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 2043.00 0.33 10.08 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 12365.00 1.99 61.00 86.35 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 5652.00 0.91 27.88 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 131.00 0.02 0.65 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 305.00 0.05 1.50 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 5083.00 0.82 25.08 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 120999.00 19.46 596.93 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 263.00 60.32 1.30 91.96 FTX-219 lncRNA spleen (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 57.00 13.07 0.28 100.0 FTX-219 lncRNA spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 115.00 2.00 0.57 67.25 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 131.00 2.27 0.65 86.75 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 2304.00 39.98 11.37 85.3 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 56.00 0.97 0.28 32.75 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 889.00 15.43 4.39 54.24 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 524.00 9.09 2.59 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 355.00 6.16 1.75 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 80.00 1.39 0.39 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 275.00 1.36 1.36 70.51 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2225.00 11.01 10.98 97.12 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 29.00 0.14 0.14 100.0 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 882.00 4.37 4.35 51.79 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 41.00 0.20 0.20 100.0 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 53.00 0.26 0.26 100.0 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 38.00 0.19 0.19 100.0 ENST00000651540 lncRNA spleen (Tissue)