ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 148.00 17.05 0.73 100.0 MEG8-234 lncRNA spleen (Tissue)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 358.00 41.24 1.77 100.0 MEG8-234 lncRNA spleen (Tissue)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 293.00 65.84 1.45 100.0 MEG8-240 lncRNA spleen (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 5.00 16.67 0.02 100.0 SNHG14-306 lncRNA spleen (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 413.00 11.14 2.04 100.0 ENST00000666735 lncRNA spleen (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 38.00 1.02 0.19 100.0 ENST00000666735 lncRNA spleen (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 543.00 70.52 2.68 100.0 MEG8-242 lncRNA spleen (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 19398.00 96.02 95.70 99.34 MEG8-244 lncRNA spleen (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 92.00 0.46 0.45 100.0 MEG8-244 lncRNA spleen (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 228.00 1.13 1.12 100.0 MEG8-244 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 3166.00 0.28 15.62 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1054.00 0.09 5.20 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 9.00 0.00 0.04 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 15630.00 1.39 77.11 99.17 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1172.25 0.10 5.78 67.25 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 2760.00 0.24 13.62 82.02 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 496664.00 44.07 2450.20 99.56 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 2705.00 0.24 13.34 76.22 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 158317.00 14.05 781.03 99.05 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 41160.00 3.65 203.06 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 147477.00 13.09 727.55 99.84 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 268.00 0.02 1.32 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 116.00 0.01 0.57 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1900.00 0.17 9.37 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 420.00 0.04 2.07 100.0 SNHG1-248 lncRNA spleen (Tissue)