ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 701.00 0.15 3.46 39.63 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 1213.00 0.26 5.98 100.0 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3950.00 0.85 19.49 50.24 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2619.00 0.57 12.92 61.23 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 440.00 0.10 2.17 40.29 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 164.00 0.04 0.81 26.97 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 7682.00 1.66 37.90 84.16 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 70760.00 15.29 349.08 82.7 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 332766.00 71.90 1641.64 98.55 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2853.00 0.62 14.07 55.53 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 13153.00 2.84 64.89 53.17 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1184.00 0.26 5.84 100.0 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 5.00 2.73 0.02 100.0 RPS8-207 protein coding CDS not defined spleen (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 143.00 21.09 0.71 100.0 RPL7A-206 protein coding CDS not defined spleen (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 82.00 12.09 0.40 100.0 RPL7A-206 protein coding CDS not defined spleen (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 260.00 38.35 1.28 100.0 RPL7A-206 protein coding CDS not defined spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 6.00 0.00 0.03 100.0 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 5214.00 1.27 25.72 100.0 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 692.00 0.17 3.41 100.0 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 22344.00 5.46 110.23 94.45 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 375763.00 91.81 1853.76 96.97 RPL21-209 retained intron spleen (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 33.00 38.82 0.16 100.0 GABRE-209 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 1608.00 21.81 7.93 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 52.00 0.71 0.26 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 351.00 4.76 1.73 100.0 RPL13A-212 retained intron spleen (Tissue)