ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 851.00 17.35 4.20 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 18.00 0.37 0.09 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 812.00 16.55 4.01 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1112.00 22.67 5.49 73.21 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 51.00 79.69 0.25 100.0 MRPL32-203 nonsense mediated decay spleen (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 13.00 56.52 0.06 100.0 ENST00000436739 lncRNA spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 34.00 0.70 0.17 10.73 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3154.00 64.47 15.56 90.58 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 184.00 3.76 0.91 100.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 709.00 63.25 3.50 100.0 SNHG16-201 lncRNA spleen (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 32025.00 85.73 157.99 94.27 SNORD105B-201 snoRNA spleen (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 337.00 37.16 1.66 62.52 SNORD121B-201 snoRNA spleen (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 30.00 4.97 0.15 100.0 SNORD127-201 snoRNA spleen (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10280.00 94.25 50.71 100.0 SNORD42B-201 snoRNA spleen (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 149.00 2.34 0.74 100.0 RNY4P25-201 misc RNA spleen (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 215.00 71.91 1.06 100.0 SNORD121A-201 snoRNA spleen (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1704.00 96.27 8.41 100.0 SNORD126-201 snoRNA spleen (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1639.00 46.50 8.09 100.0 SNHG12-201 retained intron spleen (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2247.00 95.70 11.09 100.0 SMC1A-204 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 18.00 0.87 0.09 81.82 DDX39B-219 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 315.00 15.28 1.55 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 833.00 40.42 4.11 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2487.00 86.06 12.27 100.0 RPS8-206 protein coding CDS not defined spleen (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 305.00 6.82 1.50 100.0 RPL13-207 retained intron spleen (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2330.00 52.14 11.49 100.0 RPL13-207 retained intron spleen (Tissue)