ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 563.00 53.36 2.78 100.0 HCN2-201 protein coding spleen (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 44.00 7.96 0.22 100.0 ATP5MC3-201 protein coding spleen (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 70.00 76.92 0.35 100.0 CDC25A-201 protein coding spleen (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 281.00 49.82 1.39 100.0 RUNX3-201 protein coding spleen (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 294.00 55.37 1.45 100.0 BLOC1S4-201 protein coding spleen (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 205.00 17.30 1.01 100.0 ATAD5-201 protein coding spleen (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 57.00 8.58 0.28 100.0 SLITRK5-201 protein coding spleen (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 4.00 18.18 0.02 100.0 HASPIN-201 protein coding spleen (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 387.00 98.22 1.91 100.0 ATG101-201 protein coding spleen (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 20.00 51.28 0.10 100.0 PRICKLE1-201 protein coding spleen (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 15.00 100.00 0.07 100.0 MIR133A2-201 miRNA spleen (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 7.00 26.92 0.03 100.0 PBLD-204 protein coding spleen (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 189019.00 86.57 932.49 95.35 MIRLET7BHG-201 lncRNA spleen (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 11509.00 5.27 56.78 79.27 MIRLET7BHG-201 lncRNA spleen (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 3.00 6.25 0.01 60.0 MIR375-201 miRNA spleen (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 45.00 93.75 0.22 97.83 MIR375-201 miRNA spleen (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 3641.00 53.24 17.96 100.0 MIR30E-201 miRNA spleen (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2759.00 40.34 13.61 100.0 MIR30E-201 miRNA spleen (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 283.00 39.53 1.40 100.0 MIR29A-201 miRNA spleen (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 83.00 84.69 0.41 100.0 MIR345-201 miRNA spleen (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 18664.00 98.59 92.08 100.0 MIR16-2-201 miRNA spleen (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1314.00 95.70 6.48 100.0 MIR340-201 miRNA spleen (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 7.00 0.51 0.03 100.0 MIR340-201 miRNA spleen (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 814.00 23.26 4.02 100.0 MIR107-201 miRNA spleen (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 106.00 79.70 0.52 81.54 MIR381-201 miRNA spleen (Tissue)