ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 408.00 0.09 2.01 82.09 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 7676.00 87.30 37.87 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 236.00 3.16 1.16 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 1274704.00 99.66 6288.52 99.96 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 125.00 0.28 0.62 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 33465.00 75.82 165.09 92.41 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 363.00 64.59 1.79 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 292.00 12.43 1.44 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 640.00 29.66 3.16 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 20890.00 97.34 103.06 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 7952.00 98.84 39.23 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 50796.00 64.35 250.59 95.46 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 208.00 0.26 1.03 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 81.00 0.01 0.40 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 1280.00 55.94 6.31 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 273.00 8.42 1.35 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 67.00 2.93 0.33 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 294.00 12.85 1.45 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 289.00 12.63 1.43 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 5.00 9.80 0.02 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA spleen (Tissue)