ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 172.00 6.00 0.67 43.65 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 124.00 4.33 0.48 62.63 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 150.00 5.23 0.58 73.53 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 6834.29 4.10 26.54 53.86 5S_rRNA.20-201 rRNA pseudogene transverse colon (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1451.00 10.49 5.63 100.0 HSPA9-211 retained intron transverse colon (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 9387.00 67.89 36.45 92.76 HSPA9-211 retained intron transverse colon (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 7792.00 55.36 30.26 100.0 DNM3OS-205 lncRNA transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 281.00 0.19 1.09 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 2385.00 1.62 9.26 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 53.00 0.04 0.21 63.1 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 10010.00 6.81 38.87 97.8 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 199.00 0.14 0.77 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 1854.00 1.26 7.20 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 40.00 0.03 0.16 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 74672.00 50.77 289.95 99.94 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 957.00 0.65 3.72 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 10707.00 7.28 41.58 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 945.00 0.64 3.67 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 145.00 0.10 0.56 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 8231.00 5.60 31.96 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 768.00 0.52 2.98 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 1336.00 0.91 5.19 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1562.00 1.06 6.07 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 3428.00 2.33 13.31 86.07 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 3982.00 2.71 15.46 100.0 GAS5-230 retained intron transverse colon (Tissue)