ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 119.14 0.04 0.46 48.83 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 265715.00 78.75 1031.77 87.49 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 69475.00 20.59 269.77 90.22 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 4.00 0.22 0.02 100.0 MIR133A1HG-202 lncRNA transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 514.00 0.96 2.00 49.57 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 1313.00 2.45 5.10 11.14 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 395.00 0.74 1.53 100.0 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 46802.00 87.20 181.73 98.77 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 2647.00 4.93 10.28 97.64 RPL17-211 retained intron transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 43.00 33.86 0.17 39.81 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 4.00 3.15 0.02 100.0 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 2.00 1.57 0.01 100.0 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 816.00 4.53 3.17 100.0 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 8044.54 44.62 31.24 51.4 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 8652.33 47.99 33.60 52.28 RPL17-214 retained intron transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 108.00 0.03 0.42 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 330429.00 98.20 1283.05 99.87 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 823.00 0.24 3.20 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 69.00 29.36 0.27 100.0 MIR151B-201 miRNA transverse colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 147.00 1.48 0.57 100.0 SNORD3A-201 snoRNA transverse colon (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 4738.00 79.74 18.40 100.0 SNORD92-201 snoRNA transverse colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 8462.00 66.60 32.86 100.0 NSRP1-214 protein coding transverse colon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2424.00 19.08 9.41 79.76 NSRP1-214 protein coding transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 535.00 6.09 2.08 100.0 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1547.00 17.61 6.01 96.87 MIR23AHG-201 lncRNA transverse colon (Tissue)