ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1862.00 21.19 7.23 81.38 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2036.00 23.17 7.91 93.91 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 882.00 10.04 3.42 72.3 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 124.00 56.11 0.48 100.0 ODAD3-204 nonsense mediated decay transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 9186.00 8.62 35.67 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 789.00 0.74 3.06 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 62775.00 58.93 243.75 70.21 VMP1-217 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1137.00 0.09 4.41 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 958377.92 74.21 3721.36 77.43 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 331014.55 25.63 1285.32 25.84 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1599.00 0.12 6.21 89.13 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 152.00 0.01 0.59 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 11.00 0.00 0.04 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 146.00 26.89 0.57 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 222.00 40.88 0.86 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1763794.00 66.40 6848.77 68.13 CARMN-209 lncRNA transverse colon (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1058.00 24.60 4.11 100.0 ENST00000602478 lncRNA transverse colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 26.00 27.96 0.10 100.0 PPFIA1P1-201 processed pseudogene transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 756.00 65.06 2.94 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 121.00 10.41 0.47 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 30.00 56.60 0.12 100.0 SNORD115-40-201 snoRNA transverse colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 3367.00 98.25 13.07 100.0 MIR98-201 miRNA transverse colon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 1846.00 89.01 7.17 100.0 SNORD113-5-201 snoRNA transverse colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 284.00 93.42 1.10 100.0 MIR15A-201 miRNA transverse colon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 6.00 66.67 0.02 100.0 MIR376C-201 miRNA transverse colon (Tissue)