ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 206.00 0.70 0.93 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 4022.00 13.73 18.19 40.47 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 521.00 1.78 2.36 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 15652.00 53.43 70.81 88.61 ENST00000651540 lncRNA stomach (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 2633.00 0.62 11.91 100.0 MIRLET7A1HG-203 lncRNA stomach (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 300.00 85.47 1.36 100.0 MEG8-225 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 1978.00 24.48 8.95 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 3216.00 39.80 14.55 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 1213.00 15.01 5.49 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 6.00 0.07 0.03 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 4.00 0.05 0.02 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 122.00 5.67 0.55 100.0 SNHG14-234 lncRNA stomach (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 93.00 4.32 0.42 100.0 SNHG14-234 lncRNA stomach (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 278.00 2.89 1.26 100.0 ENST00000655317 lncRNA stomach (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 3236.00 33.66 14.64 86.41 ENST00000655317 lncRNA stomach (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 13149.00 2.88 59.48 96.92 LINC01962-202 lncRNA stomach (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 438271.00 95.85 1982.68 100.0 LINC01962-202 lncRNA stomach (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 442.00 0.10 2.00 100.0 LINC01962-202 lncRNA stomach (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 5551.00 94.10 25.11 100.0 MEG8-228 lncRNA stomach (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 2049.00 15.07 9.27 100.0 LIMD1-AS1-204 lncRNA stomach (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 3880.00 28.53 17.55 98.9 LIMD1-AS1-204 lncRNA stomach (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 3684.00 60.10 16.67 84.36 MIR99AHG-262 lncRNA stomach (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 1118.00 18.24 5.06 100.0 MIR99AHG-262 lncRNA stomach (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 175.00 77.09 0.79 86.63 MIR9-2HG-225 lncRNA stomach (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 600.00 54.01 2.71 100.0 MEG8-233 lncRNA stomach (Tissue)