ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 10.00 0.00 0.05 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 292.00 0.09 1.32 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 2423.00 0.71 10.96 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 4976.00 1.46 22.51 83.87 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 5716.00 1.68 25.86 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 31.00 0.01 0.14 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 81.00 0.02 0.37 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 3641.00 1.07 16.47 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 84343.00 24.81 381.56 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 178.00 24.79 0.81 100.0 FTX-219 lncRNA stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 350.00 48.75 1.58 91.38 FTX-219 lncRNA stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 177.00 1.57 0.80 60.2 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 186.00 1.65 0.84 84.93 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 3914.00 34.81 17.71 85.8 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 117.00 1.04 0.53 39.8 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1448.00 12.88 6.55 58.91 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 527.00 4.69 2.38 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 385.00 3.42 1.74 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 74.00 0.66 0.33 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 250.00 0.85 1.13 60.98 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2246.00 7.67 10.16 92.93 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 14.00 0.05 0.06 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1331.00 4.54 6.02 62.66 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 26.00 0.09 0.12 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 25.00 0.09 0.11 100.0 ENST00000651540 lncRNA stomach (Tissue)