ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 94.00 8.46 0.43 100.0 MEG8-233 lncRNA stomach (Tissue)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 202.00 34.06 0.91 100.0 MEG8-234 lncRNA stomach (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 52.00 8.77 0.24 100.0 MEG8-234 lncRNA stomach (Tissue)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 57.00 48.31 0.26 100.0 MEG8-240 lncRNA stomach (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 7.00 5.83 0.03 100.0 SNHG14-306 lncRNA stomach (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 60.00 4.33 0.27 100.0 ENST00000666735 lncRNA stomach (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 10.00 0.72 0.05 100.0 ENST00000666735 lncRNA stomach (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 306.00 68.46 1.38 100.0 MEG8-242 lncRNA stomach (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 107.00 0.67 0.48 100.0 MEG8-244 lncRNA stomach (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 291.00 1.83 1.32 100.0 MEG8-244 lncRNA stomach (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 15181.00 95.26 68.68 99.59 MEG8-244 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1288.00 0.30 5.83 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 8723.00 2.06 39.46 98.63 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1095.13 0.26 4.95 60.11 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1034.00 0.24 4.68 74.34 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 217625.00 51.31 984.51 99.51 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 565.00 0.13 2.56 76.45 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 63427.00 14.95 286.94 99.03 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 14293.00 3.37 64.66 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 19789.00 4.67 89.52 99.93 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 237.00 0.06 1.07 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 104.00 0.02 0.47 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 862.00 0.20 3.90 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 297.00 0.07 1.34 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 257.00 0.06 1.16 100.0 SNHG1-248 lncRNA stomach (Tissue)