ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 347.00 22.33 1.57 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 37133.24 53.70 167.99 59.8 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 25.10 0.04 0.11 32.6 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 43.45 0.06 0.20 56.43 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 115.00 33.53 0.52 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 70.00 20.41 0.32 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 91.00 3.85 0.41 100.0 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 454.00 19.22 2.05 79.93 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 297.00 12.57 1.34 66.59 SNHG14-224 lncRNA stomach (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 10909.42 7.30 49.35 43.97 5S_rRNA.20-201 rRNA pseudogene stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 168.00 5.61 0.76 100.0 HSPA9-211 retained intron stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 853.00 28.50 3.86 53.31 HSPA9-211 retained intron stomach (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 4952.00 62.16 22.40 100.0 DNM3OS-205 lncRNA stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1148.00 0.34 5.19 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 66.00 0.02 0.30 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1369.00 0.40 6.19 86.43 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 19.00 0.01 0.09 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 846.00 0.25 3.83 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 174.00 0.05 0.79 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 214380.00 63.07 969.83 99.84 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 144.00 0.04 0.65 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 3013.00 0.89 13.63 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1298.00 0.38 5.87 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 165.00 0.05 0.75 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 5929.00 1.74 26.82 100.0 GAS5-230 retained intron stomach (Tissue)