ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 103.00 41.37 0.47 100.0 MIR151B-201 miRNA stomach (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 52.00 2.00 0.24 100.0 SNORD3A-201 snoRNA stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2211.00 38.35 10.00 100.0 NSRP1-214 protein coding stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1605.00 27.84 7.26 58.99 NSRP1-214 protein coding stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2222.00 25.40 10.05 96.27 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1201.00 13.73 5.43 81.42 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2104.00 24.05 9.52 91.36 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1228.00 14.04 5.56 81.54 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 6.00 3.09 0.03 100.0 ODAD3-204 nonsense mediated decay stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 4115.00 7.41 18.62 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 91.00 0.16 0.41 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 29916.00 53.89 135.34 66.31 VMP1-217 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 529.00 36.61 2.39 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 63.00 4.36 0.29 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 4431403.00 69.94 20047.08 71.6 CARMN-209 lncRNA stomach (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 2918.00 59.99 13.20 100.0 PPFIA1P1-201 processed pseudogene stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 225.00 22.23 1.02 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 588.00 58.10 2.66 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 6009.00 95.46 27.18 100.0 MIR98-201 miRNA stomach (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 44.00 31.21 0.20 100.0 SNORD113-5-201 snoRNA stomach (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 334.00 91.51 1.51 100.0 MIR15A-201 miRNA stomach (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 6.00 75.00 0.03 100.0 MIR376C-201 miRNA stomach (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 772.00 46.79 3.49 100.0 SNHG21-206 retained intron stomach (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 31606.00 47.35 142.98 96.46 MIR486-1-201 miRNA stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 18228.00 80.85 82.46 99.96 NOP56-219 retained intron stomach (Tissue)