ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 144.00 0.64 0.65 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 835.00 3.70 3.78 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 1018.00 4.52 4.61 55.87 NOP56-219 retained intron stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 4.00 0.04 0.02 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 1695.91 17.03 7.67 37.22 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 2491.00 25.01 11.27 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 10.00 0.10 0.05 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 2621.42 26.32 11.86 57.54 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 11.00 100.00 0.05 100.0 MIR7974-201 miRNA stomach (Tissue)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 2.00 66.67 0.01 100.0 MIR376A1-201 miRNA stomach (Tissue)
ENST00000616574.2 ENST00000616574.2_7_27_+ 7–27 1.00 33.33 0.00 100.0 MIR376A1-201 miRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 540.00 3.52 2.44 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 35.00 0.23 0.16 79.55 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 16.00 0.10 0.07 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 5559.00 36.27 25.15 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 896.00 5.85 4.05 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 923.00 9.17 4.18 100.0 U2.6-201 snRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 88.00 0.21 0.40 9.21 ENST00000619323 lncRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 40796.00 95.41 184.56 97.13 ENST00000619323 lncRNA stomach (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 181.00 12.58 0.82 100.0 SCARNA4-202 scaRNA stomach (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 376.00 79.32 1.70 100.0 ENST00000625572 miRNA stomach (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1764.00 87.54 7.98 100.0 ENST00000630615 snoRNA stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 69.00 7.17 0.31 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 737.00 76.53 3.33 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 838.00 53.93 3.79 100.0 SNORD98-201 snoRNA stomach (Tissue)