ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 215.00 44.42 0.97 55.99 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 248.00 77.26 1.12 100.0 ENST00000578036 lncRNA stomach (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 285.00 86.10 1.29 100.0 RPL23A-207 protein coding stomach (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 328.00 84.97 1.48 100.0 MIR744-201 miRNA stomach (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 766.00 72.95 3.47 100.0 MIR378C-201 miRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3236.00 70.67 14.64 76.68 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 71.00 1.55 0.32 4.19 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 297.63 0.05 1.35 60.25 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 260.75 0.04 1.18 60.5 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 510063.00 80.91 2307.46 87.91 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 117192.00 18.59 530.16 91.66 RPL23A-208 retained intron stomach (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 13.00 0.80 0.06 100.0 MIR133A1HG-202 lncRNA stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1120.00 4.71 5.07 68.54 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2203.00 9.26 9.97 44.09 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 113.00 0.47 0.51 100.0 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 15227.00 64.00 68.88 96.77 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 2824.00 11.87 12.78 93.51 RPL17-211 retained intron stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 37.00 32.17 0.17 39.36 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1.00 0.87 0.00 100.0 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 6435.00 41.20 29.11 100.0 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 4564.59 29.22 20.65 57.53 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3727.64 23.86 16.86 45.21 RPL17-214 retained intron stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 2.00 0.00 0.01 100.0 SNORD43-201 snoRNA stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 200636.00 97.67 907.65 99.94 SNORD43-201 snoRNA stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 40.00 0.02 0.18 100.0 SNORD43-201 snoRNA stomach (Tissue)