ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 409.00 1.24 1.85 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 12.00 0.04 0.05 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 31152.00 94.81 140.93 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 627.00 96.61 2.84 100.0 TEKT4P2-201 transcribed unprocessed pseudogene stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 17701.00 75.91 80.08 92.92 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 877.00 3.76 3.97 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1.00 0.00 0.00 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 890.00 3.82 4.03 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 500.00 2.14 2.26 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 176.00 0.05 0.80 100.0 ENST00000563103 lncRNA stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1075.00 28.94 4.86 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 494.00 13.30 2.23 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 209298.00 95.23 946.84 97.92 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1613.00 0.73 7.30 61.49 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 4205.00 31.93 19.02 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3896.00 29.58 17.62 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 58.00 0.44 0.26 14.72 RBMX-210 retained intron stomach (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 166.00 9.00 0.75 100.0 RPL4-214 retained intron stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3740.33 12.80 16.92 16.96 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 18320.97 62.70 82.88 82.64 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 313.00 1.07 1.42 100.0 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1041.00 24.33 4.71 100.0 ENST00000570843 lncRNA stomach (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 4575.00 84.49 20.70 100.0 MIR497HG-207 lncRNA stomach (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 38189.00 97.26 172.76 97.76 MIR22HG-212 lncRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 169.00 34.92 0.76 44.01 SNORD53B-201 snoRNA stomach (Tissue)