ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 19151.00 2.09 57.02 90.18 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 206.00 0.02 0.61 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1067.00 0.12 3.18 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 26996.00 2.95 80.38 97.14 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 801.00 13.20 2.39 81.57 SNHG14-323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1128.00 0.42 3.36 58.69 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 241825.00 90.65 720.05 98.41 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 1005.00 0.38 2.99 48.13 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 13685.00 5.13 40.75 92.6 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 20284.00 57.57 60.40 89.59 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 13881.00 39.40 41.33 60.46 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 24040.00 86.25 71.58 97.09 SNHG14-341 lncRNA gastroesophageal sphincter (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 1147.00 39.55 3.42 100.0 NCL-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 425.00 28.15 1.27 100.0 FMN2-209 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 53.00 0.67 0.16 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 217.00 2.73 0.65 21.07 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 218.00 2.75 0.65 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 399.00 5.03 1.19 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 369.00 4.65 1.10 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 813.00 10.24 2.42 78.93 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 131.00 17.82 0.39 100.0 SNHG10-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 19619.77 43.09 58.42 44.59 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 24361.24 53.50 72.54 68.01 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 9.32 0.02 0.03 93.24 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2325.00 77.79 6.92 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)