ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 285.00 9.53 0.85 80.97 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 101.00 3.38 0.30 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 30.00 11.95 0.09 100.0 RPSA-216 retained intron gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1265.00 1.85 3.77 63.95 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 64827.00 94.65 193.03 98.12 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 213.00 91.42 0.63 100.0 HPS4-237 retained intron gastroesophageal sphincter (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 78.00 74.29 0.23 100.0 MEG8-253 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 1.00 0.18 0.00 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 13.00 2.36 0.04 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 216.00 39.13 0.64 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1406.00 13.44 4.19 100.0 DNAJC5-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 989.00 12.87 2.94 100.0 ENST00000707189 TEC gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 1919.00 3.02 5.71 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 23419.03 36.84 69.73 40.93 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 1.00 0.00 0.00 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 9.00 0.01 0.03 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 36844.82 57.96 109.71 62.1 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 66.00 0.10 0.20 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 365.00 0.57 1.09 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 36.00 0.06 0.11 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 87.00 0.14 0.26 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 15524.00 4.08 46.22 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1510.00 0.40 4.50 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 46.00 0.01 0.14 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2057.00 0.54 6.12 66.83 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)