ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 351.00 0.02 1.05 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 15347.00 0.69 45.70 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 177.00 0.01 0.53 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 436.00 0.02 1.30 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 75201.00 3.40 223.92 82.33 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 374721.00 16.94 1115.75 99.05 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 59.00 0.00 0.18 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 30.00 0.00 0.09 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 42515.00 1.92 126.59 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 554.00 0.03 1.65 77.7 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1231.15 0.06 3.67 36.86 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 803.00 0.04 2.39 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 525.00 0.02 1.56 58.08 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 344.00 0.02 1.02 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 343.00 0.02 1.02 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 175.00 0.01 0.52 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 109115.00 29.85 324.90 100.0 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 128460.00 35.14 382.50 95.72 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 98921.00 27.06 294.54 88.44 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 215.00 0.02 0.64 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2013.00 0.22 5.99 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 575280.57 62.93 1712.93 71.56 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 229.00 0.03 0.68 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 291.00 0.03 0.87 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 250456.08 27.40 745.75 29.55 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)