ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 17.38 0.06 0.05 48.29 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 13.20 0.05 0.04 32.99 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 862.00 4.99 2.57 100.0 U2.6-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 49.00 0.38 0.15 23.22 ENST00000619323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 11771.00 90.66 35.05 97.06 ENST00000619323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 241.00 16.89 0.72 100.0 SCARNA4-202 scaRNA gastroesophageal sphincter (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 2124.00 48.31 6.32 100.0 ENST00000625572 miRNA gastroesophageal sphincter (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 10652.00 94.05 31.72 100.0 ENST00000628177 snoRNA gastroesophageal sphincter (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1694.00 89.58 5.04 100.0 ENST00000630615 snoRNA gastroesophageal sphincter (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 509.00 63.23 1.52 100.0 DMRT2-209 protein coding gastroesophageal sphincter (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 25.00 3.11 0.07 100.0 DMRT2-209 protein coding gastroesophageal sphincter (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 344.00 21.00 1.02 100.0 SNORD98-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 866.00 52.87 2.58 100.0 SNORD98-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 35489.56 60.95 105.67 62.67 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 10.39 0.02 0.03 49.46 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 6.00 0.01 0.02 100.0 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 9.37 0.02 0.03 44.63 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 678.00 23.91 2.02 100.0 MEG8-222 lncRNA gastroesophageal sphincter (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 788.00 27.79 2.35 100.0 MEG8-222 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 12165.00 8.27 36.22 97.19 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 69466.00 47.21 206.84 96.4 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 29082.00 19.76 86.59 100.0 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 19641.00 13.35 58.48 94.46 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 222.00 0.15 0.66 100.0 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 1501.00 1.02 4.47 56.34 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)