ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 6705.00 94.64 19.96 100.0 SNORD11B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 3755.00 70.40 11.18 100.0 SNORD91B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 13101.00 52.42 39.01 58.14 SNORD91A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 58568.00 48.63 174.39 98.0 MIR486-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 40629.00 52.58 120.98 61.94 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 169.00 0.22 0.50 100.0 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 400.00 0.52 1.19 100.0 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 6145.00 7.95 18.30 74.85 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 437.00 1.18 1.30 41.15 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 6847.67 18.41 20.39 44.61 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 36.00 0.10 0.11 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 14377.00 38.66 42.81 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 10.00 0.03 0.03 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 962.00 2.59 2.86 68.76 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 8699.14 23.39 25.90 56.67 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 539.00 1.87 1.60 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1104.61 3.84 3.29 35.12 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 608.00 2.11 1.81 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 53.00 0.18 0.16 86.89 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 2.00 0.01 0.01 6.9 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 18.00 0.06 0.05 94.74 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2122.68 7.38 6.32 67.49 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 6679.00 23.21 19.89 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 341.00 1.19 1.02 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 555.00 1.93 1.65 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)