ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 254.00 2.75 0.76 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 27897.00 73.01 83.06 93.98 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 4661.00 12.20 13.88 71.49 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1781.00 0.47 5.30 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 851.00 0.23 2.53 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2352.00 0.63 7.00 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 251511.00 66.98 748.89 68.92 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 476.00 14.23 1.42 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1966.00 58.76 5.85 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 11748.44 24.39 34.98 41.54 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 19416.98 40.31 57.82 75.03 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 1128.00 2.34 3.36 100.0 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 511.00 12.40 1.52 100.0 ENST00000570843 lncRNA gastroesophageal sphincter (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2416.00 82.97 7.19 100.0 MIR497HG-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 19098.00 95.66 56.87 96.47 MIR22HG-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 28069.00 90.51 83.58 96.1 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 418.00 1.35 1.24 29.37 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 1005.00 3.24 2.99 70.63 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 65.00 46.10 0.19 100.0 ENST00000578036 lncRNA gastroesophageal sphincter (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 1127.00 87.98 3.36 100.0 RPL23A-207 protein coding gastroesophageal sphincter (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 665.00 94.19 1.98 100.0 MIR744-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 37.00 41.57 0.11 100.0 MIR378C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 474.00 57.32 1.41 61.72 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 2.00 0.24 0.01 100.0 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 8.00 0.97 0.02 1.89 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)