ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 656.38 0.11 1.95 52.13 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 986.00 0.16 2.94 59.94 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 480072.00 78.00 1429.44 88.91 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 130497.00 21.20 388.56 91.74 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 21.00 1.28 0.06 100.0 MIR133A1HG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 5812.00 2.97 17.31 46.92 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 15181.00 7.75 45.20 46.6 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1777.00 0.91 5.29 100.0 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 110767.00 56.52 329.82 96.98 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 57410.00 29.29 170.94 98.47 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 10.00 13.33 0.03 18.18 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 6.00 8.00 0.02 100.0 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 3685.00 17.11 10.97 100.0 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 5916.80 27.47 17.62 43.81 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 9115.15 42.32 27.14 57.81 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1001016.00 99.44 2980.58 99.86 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 3.00 0.00 0.01 100.0 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 57.00 0.01 0.17 100.0 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 101.00 42.44 0.30 100.0 MIR151B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 17.00 0.47 0.05 100.0 SNORD3A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 7334.00 87.51 21.84 100.0 SNORD92-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3250.00 26.69 9.68 100.0 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 7452.00 61.20 22.19 89.71 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 314.00 3.90 0.93 100.0 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2194.00 27.27 6.53 97.04 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)