ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 233898.00 71.30 696.44 99.05 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2196.00 0.67 6.54 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 559.00 0.17 1.66 51.1 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 50.00 0.02 0.15 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1000.00 0.30 2.98 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 20.00 0.01 0.06 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 25866.00 97.86 77.02 100.0 RPS8-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 417.00 22.74 1.24 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 127.00 6.92 0.38 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 786.00 42.86 2.34 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 226033.00 21.03 673.03 98.85 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 8454.00 0.79 25.17 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 831831.00 77.38 2476.82 96.76 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 9.00 0.00 0.03 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1298.00 0.12 3.86 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 34.00 47.89 0.10 100.0 GABRE-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 30252.00 29.06 90.08 80.89 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 53684.00 51.58 159.85 99.69 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 4441.00 4.27 13.22 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 94.00 0.09 0.28 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 441.00 0.42 1.31 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 706.00 0.68 2.10 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 613.00 0.59 1.83 67.07 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 102.00 1.34 0.30 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 270.00 3.54 0.80 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)