ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1841.00 0.57 11.82 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 6039.00 1.88 38.77 71.19 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 29835.00 9.28 191.53 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 8.00 0.00 0.05 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 6.00 0.00 0.04 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 130.00 0.04 0.83 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 1981.00 0.62 12.72 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 494.00 0.15 3.17 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 94.00 0.03 0.60 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 1.00 0.00 0.01 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 52107.00 75.85 334.51 91.86 FTX-219 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 1126.00 1.64 7.23 100.0 FTX-219 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 9.00 0.03 0.06 81.82 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 144.00 0.49 0.92 29.69 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 1233.00 4.22 7.92 20.42 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 2.00 0.01 0.01 18.18 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 13345.00 45.64 85.67 96.89 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 8.00 0.03 0.05 100.0 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 459.00 1.57 2.95 100.0 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1834.00 6.27 11.77 100.0 CTC1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 732.00 4.23 4.70 71.48 ENST00000651540 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 272.00 1.57 1.75 100.0 ENST00000651540 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 4.00 0.02 0.03 100.0 ENST00000651540 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 527.00 3.05 3.38 79.37 ENST00000651540 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 75.00 0.43 0.48 100.0 ENST00000651540 lncRNA trophoblast cell (In vitro differentiated cells)