ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 3.00 0.03 0.02 100.0 SNHG14-224 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 3.00 0.03 0.02 60.0 SNHG14-224 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 1.00 0.01 0.01 100.0 SNHG14-224 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 775.00 7.11 4.98 100.0 SNHG14-224 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 146.00 1.34 0.94 86.9 SNHG14-224 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 64.00 0.59 0.41 36.57 SNHG14-224 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1605.16 20.66 10.30 64.65 5S_rRNA.20-201 rRNA pseudogene trophoblast cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 4.00 0.36 0.03 100.0 HSPA9-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 20.00 1.79 0.13 90.91 HSPA9-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 581.00 80.92 3.73 100.0 DNM3OS-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 60.00 0.02 0.39 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 82.00 0.03 0.53 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 1.00 0.00 0.01 33.33 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1387.00 0.43 8.90 99.43 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 7587.00 2.36 48.71 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 110.00 0.03 0.71 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 509.00 0.16 3.27 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 13926.00 4.33 89.40 99.59 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 4598.00 1.43 29.52 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 59692.00 18.57 383.21 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 30658.00 9.54 196.82 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 6484.00 2.02 41.63 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 102573.00 31.92 658.49 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 3190.00 0.99 20.48 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 203.00 0.06 1.30 100.0 GAS5-230 retained intron trophoblast cell (In vitro differentiated cells)