ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 372.00 4.05 0.44 100.0 SNORD104-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 12152.00 76.62 14.27 96.9 SNORD115-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 33861.00 85.63 39.75 97.92 RNA5SP358-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 33.00 0.26 0.04 76.74 RNA5SP145-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 3.00 10.71 0.00 100.0 Y_RNA.105-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 16.00 1.62 0.02 100.0 RNY4P9-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 896.00 4.34 1.05 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 130.00 0.63 0.15 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 4147.00 20.07 4.87 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 553.00 2.68 0.65 61.93 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 374.00 1.81 0.44 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 87.00 0.42 0.10 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 57298.00 97.21 67.27 99.06 SNORD115-18-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 112.00 6.31 0.13 96.55 RNY4P27-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 9.00 0.51 0.01 69.23 RNY4P27-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 4048.00 20.34 4.75 100.0 Y_RNA.136-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 7098.00 82.05 8.33 100.0 SNORD115-41-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 178.00 10.27 0.21 100.0 SNORD115-5-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 1290.00 61.05 1.51 100.0 SNORD115-33-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 3872.00 87.96 4.55 93.68 SNORD114-25-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 8114.00 92.74 9.53 100.0 SNORD113-7-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363856.1 ENST00000363856.1_2_82_+ 2–82 2917.00 59.66 3.42 100.0 SNORD115-8-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 3071.00 61.46 3.61 100.0 Y_RNA.181-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 2873.00 66.20 3.37 100.0 SNORD115-16-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 2237.00 59.56 2.63 100.0 SNORD115-32-201 snoRNA smooth muscle cell (In vitro differentiated cells)