ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 2014.00 56.70 2.36 100.0 SNORD115-34-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 119.00 4.37 0.14 100.0 RNU5E-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 498.00 3.94 0.58 29.63 RNA5SP370-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 5153.00 50.33 6.05 100.0 SNORA31-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 199.00 1.58 0.23 100.0 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 253.00 2.00 0.30 51.84 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 453.00 3.59 0.53 57.41 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1425.00 11.28 1.67 100.0 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 401.00 0.30 0.47 100.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 10583.00 7.95 12.42 78.32 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 3660.31 2.75 4.30 53.81 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 7420.00 5.57 8.71 73.9 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 3103.00 2.33 3.64 33.32 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 12029.00 9.03 14.12 100.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 13315.00 10.00 15.63 75.12 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 3078.00 2.31 3.61 36.91 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 2296.47 1.72 2.70 43.58 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 4024.00 3.02 4.72 60.09 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 20896.00 15.69 24.53 81.17 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 275.00 0.21 0.32 100.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 4374.98 3.29 5.14 69.63 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 3594.71 2.70 4.22 56.49 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 6430.00 4.83 7.55 40.01 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 2310.00 90.52 2.71 100.0 SNORD114-14-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 111.00 1.21 0.13 100.0 SNORD104-201 snoRNA smooth muscle cell (In vitro differentiated cells)