ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 1833.00 65.68 2.15 100.0 SNORD115-30-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 1295.81 5.66 1.52 75.96 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 714.00 3.12 0.84 100.0 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 297.92 1.30 0.35 23.18 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 3443.00 15.03 4.04 100.0 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 275.00 1.20 0.32 100.0 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 3088.00 55.80 3.63 100.0 SNORD115-42-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 1362.30 2.07 1.60 33.28 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 2501.41 3.80 2.94 55.11 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 409.00 0.62 0.48 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 328.00 0.50 0.39 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 2004.28 3.04 2.35 51.66 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 607.00 0.92 0.71 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 750.00 1.14 0.88 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 3220.00 4.89 3.78 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 370.00 0.56 0.43 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 664.00 17.62 0.78 100.0 SNORD114-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1844.00 48.93 2.16 100.0 SNORD114-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 1057.00 3.52 1.24 100.0 Y_RNA.234-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 500.00 0.97 0.59 100.0 RNA5S9-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 2666.00 81.35 3.13 100.0 SNORD115-23-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 365.00 6.36 0.43 100.0 RNA5SP141-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 67.00 24.36 0.08 100.0 SNORD114-15-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 291.00 47.47 0.34 100.0 ENST00000364722 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 3753.00 59.75 4.41 100.0 SNORD115-15-201 snoRNA smooth muscle cell (In vitro differentiated cells)