ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 2779.00 6.81 3.26 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 3470.00 29.69 4.07 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 5015.00 1.48 5.89 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 21573.00 6.35 25.33 86.44 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 102.00 0.03 0.12 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 2285.00 0.67 2.68 77.2 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 15627.00 4.60 18.35 37.51 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 232.00 0.07 0.27 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 373.00 0.11 0.44 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 162.00 39.80 0.19 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 91702.00 11.36 107.66 94.44 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 184.00 25.48 0.22 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 96.00 13.30 0.11 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 6824.00 53.77 8.01 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 929.00 2.29 1.09 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 26.00 0.00 0.03 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 54875.00 6.80 64.42 41.14 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 1736.00 10.24 2.04 92.83 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 208.00 1.23 0.24 10.7 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 874.00 17.42 1.03 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 129558.00 38.78 152.10 83.65 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 66298.00 19.84 77.83 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 1132.00 19.78 1.33 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 103.00 6.12 0.12 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 809.00 0.41 0.95 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA smooth muscle cell (In vitro differentiated cells)