ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1484.00 0.99 1.74 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 136184.00 91.21 159.88 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 2786.00 85.75 3.27 100.0 MIR205HG-245 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 1129.00 26.48 1.33 100.0 TAF12-DT-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 659954.00 97.13 774.79 99.77 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 473.00 0.07 0.56 100.0 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 777.00 0.11 0.91 100.0 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 3173.00 0.47 3.73 100.0 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 7168.00 5.31 8.42 100.0 ZFAS1-242 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 123427.00 91.45 144.90 100.0 ZFAS1-242 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 82.00 47.13 0.10 100.0 ENST00000837997 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 37.00 21.26 0.04 100.0 ENST00000837997 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 1330.00 35.43 1.56 42.6 ENST00000839036 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 15.00 1.65 0.02 100.0 ENST00000849527 lncRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 16073.00 42.92 18.87 96.21 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 7748.00 20.69 9.10 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 2966.00 0.53 3.48 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 697.00 43.97 0.82 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 477.00 30.09 0.56 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 1552.00 30.93 1.82 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 2465.00 25.57 2.89 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 380.00 8.55 0.45 69.09 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 2896.00 0.52 3.40 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 7965.00 19.53 9.35 86.8 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 17.00 0.04 0.02 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA smooth muscle cell (In vitro differentiated cells)