ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 964.00 3.34 1.13 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 353.00 1.22 0.41 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 983.00 3.40 1.15 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 2730.00 9.45 3.21 56.08 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 2579.00 8.93 3.03 74.58 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 1355.00 4.69 1.59 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 7700.00 15.83 9.04 57.45 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 5822.00 11.97 6.84 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 2690.00 6.22 3.16 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 30.00 0.11 0.04 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 28.00 0.10 0.03 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 793.00 2.94 0.93 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 14336.00 53.15 16.83 87.18 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 1729.00 6.41 2.03 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 1993.00 4.91 2.34 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 6153.00 29.15 7.22 66.33 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 379.00 1.17 0.44 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 3057.00 25.90 3.59 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 788.00 6.68 0.93 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 12.00 0.10 0.01 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 784.00 6.64 0.92 87.4 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 1319.00 0.12 1.55 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 548.00 51.02 0.64 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 206.00 7.55 0.24 52.69 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 341.00 12.50 0.40 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA smooth muscle cell (In vitro differentiated cells)