ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 401.00 0.34 0.47 59.58 SNORD53B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 26.00 36.62 0.03 100.0 ENST00000578036 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 6339.00 90.25 7.44 100.0 RPL23A-207 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2848.00 94.78 3.34 100.0 MIR744-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 44.00 81.48 0.05 100.0 MIR378C-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 7.00 12.96 0.01 19.44 MIR142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 1.85 0.00 100.0 MIR142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 8.00 14.81 0.01 19.05 MIR142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 357.00 1.01 0.42 100.0 SNORD3C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 668.42 0.04 0.78 60.99 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 389.63 0.02 0.46 48.64 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1450703.00 78.12 1703.13 88.01 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 399632.00 21.52 469.17 91.48 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 30485.00 5.78 35.79 49.53 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 32186.00 6.10 37.79 31.37 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1763.00 0.33 2.07 100.0 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 299107.00 56.69 351.15 96.41 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 147597.00 27.97 173.28 95.87 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 38588.00 17.99 45.30 100.0 RPL17-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 92396.44 43.08 108.47 57.11 RPL17-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 73083.58 34.07 85.80 43.87 RPL17-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 133.00 0.01 0.16 100.0 SNORD43-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 2072536.00 99.49 2433.16 99.88 SNORD43-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 328.00 0.02 0.39 100.0 SNORD43-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 90.00 43.48 0.11 100.0 MIR151B-201 miRNA smooth muscle cell (In vitro differentiated cells)