ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 621.00 1.42 0.73 100.0 SNORD3A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 48339.00 92.98 56.75 100.0 SNORD92-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 5552.00 37.97 6.52 100.0 NSRP1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 7709.00 52.72 9.05 95.29 NSRP1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 11139.00 38.38 13.08 100.0 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1757.00 6.05 2.06 83.31 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 4080.00 14.06 4.79 89.73 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1895.00 6.53 2.22 95.9 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 529.00 1.82 0.62 60.05 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 252.00 59.43 0.30 100.0 ODAD3-204 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 7079.00 3.68 8.31 100.0 VMP1-217 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 1320.00 0.69 1.55 100.0 VMP1-217 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 139117.00 72.37 163.32 78.45 VMP1-217 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 686.00 0.03 0.81 100.0 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1531440.34 71.70 1797.91 74.26 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 537529.03 25.17 631.06 25.52 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 13890.00 0.65 16.31 91.76 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 163.00 0.01 0.19 100.0 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 20.00 0.00 0.02 100.0 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 118.00 73.29 0.14 100.0 ENST00000597420 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 8658.00 49.60 10.16 100.0 RPS11-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 5425.00 31.08 6.37 100.0 RPS11-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 196087.00 74.25 230.21 76.16 CARMN-209 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 4872.00 48.39 5.72 100.0 ENST00000602478 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 20.00 28.99 0.02 100.0 PPFIA1P1-201 processed pseudogene smooth muscle cell (In vitro differentiated cells)