ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 440.00 98.88 0.52 100.0 TEKT4P2-201 transcribed unprocessed pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 255880.00 92.82 300.40 98.24 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1663.00 0.60 1.95 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 89.00 0.03 0.10 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 6869.00 2.49 8.06 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 867.00 0.31 1.02 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1103.00 0.83 1.29 100.0 ENST00000563103 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 46157.00 88.49 54.19 100.0 RPL4-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 369.00 0.71 0.43 100.0 RPL4-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 3513.00 43.61 4.12 77.12 ENST00000565336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 691.00 8.58 0.81 47.99 ENST00000565336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1006.00 0.27 1.18 100.0 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 744.00 0.20 0.87 100.0 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3182.00 0.85 3.74 100.0 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 339504.00 90.92 398.58 93.71 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 4877.00 30.79 5.73 100.0 RPL4-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 5650.00 35.67 6.63 100.0 RPL4-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3063.89 21.89 3.60 57.6 POLG-DT-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 2519.31 18.00 2.96 61.22 POLG-DT-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 84.00 0.60 0.10 100.0 POLG-DT-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2109.00 31.19 2.48 100.0 ENST00000570843 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 7.00 7.45 0.01 100.0 MIR497HG-207 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 118645.00 98.36 139.29 99.28 MIR22HG-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 103482.00 88.13 121.49 89.71 SNORD53B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 272.00 0.23 0.32 40.42 SNORD53B-201 snoRNA smooth muscle cell (In vitro differentiated cells)