ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 13482.00 99.23 15.83 100.0 DENND3-221 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 784.00 0.25 0.92 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 4998.00 1.60 5.87 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 396.00 0.13 0.46 81.48 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 512.00 0.16 0.60 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 225.00 0.07 0.26 65.98 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 3159.00 1.01 3.71 80.94 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 116.00 0.04 0.14 34.02 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 231.00 0.07 0.27 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 38165.00 82.35 44.81 100.0 HSPA8-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 238.00 14.37 0.28 100.0 SCARNA9-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 488411.00 96.59 573.39 100.0 TAF1D-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 3047.00 0.60 3.58 100.0 TAF1D-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 25043.00 79.51 29.40 100.0 HSPA8-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 180.00 0.57 0.21 100.0 HSPA8-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 174.00 0.55 0.20 100.0 HSPA8-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1940.00 35.81 2.28 100.0 RPS2-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 149126.00 82.59 175.07 83.25 ENST00000548801 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 12043.00 47.68 14.14 100.0 ENST00000554988 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 3015.00 11.94 3.54 100.0 ENST00000554988 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 131.00 0.52 0.15 100.0 ENST00000554988 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 18662.00 42.15 21.91 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 22777.00 51.44 26.74 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 419.00 0.95 0.49 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 145.00 0.33 0.17 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)