ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 280097.00 94.07 328.83 96.27 SNORD105B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3674.00 58.72 4.31 73.3 SNORD121B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 140070.00 96.95 164.44 99.49 SNORD127-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 5.00 0.00 0.01 100.0 SNORD127-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 65172.00 94.91 76.51 100.0 SNORD42B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 418.00 1.86 0.49 100.0 RNY4P25-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 3820.00 69.54 4.48 100.0 SNORD121A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 3697.00 21.09 4.34 69.44 SNORD126-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 13327.00 76.03 15.65 90.94 SNORD126-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 41958.00 95.97 49.26 98.22 SNORD124-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 662.00 12.80 0.78 100.0 SNHG12-201 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 9489.00 35.84 11.14 86.36 RPL3-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8366.00 31.60 9.82 100.0 RPL3-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 11127.00 97.55 13.06 100.0 SMC1A-204 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 487713.00 93.30 572.58 98.24 RABGGTB-208 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 8384.00 51.36 9.84 86.53 DDX39B-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 665.00 4.07 0.78 100.0 DDX39B-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 723.00 4.43 0.85 100.0 DDX39B-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 7247.00 83.93 8.51 100.0 RPS8-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 508034.00 97.68 596.43 99.89 RPL13-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2101.00 0.40 2.47 100.0 RPL13-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 10260.00 0.76 12.05 76.15 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 4557.00 0.34 5.35 73.77 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1986.00 0.15 2.33 49.7 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 647.00 0.05 0.76 28.27 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)