ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 12228.00 2.33 14.36 100.0 SNORD12B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 11.00 1.11 0.01 100.0 Y_RNA.609-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 111.00 23.67 0.13 100.0 Y_RNA.612-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 3956.00 1.20 4.64 100.0 SNORD71-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 172.00 0.05 0.20 100.0 SNORD71-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 320796.00 97.59 376.61 99.3 SNORD71-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 377.00 18.00 0.44 62.62 MIR194-2HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1637.00 78.18 1.92 88.92 MIR194-2HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 2757.00 11.59 3.24 100.0 LINC01783-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 37.00 59.68 0.04 100.0 RPS7P15-201 processed pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 418.00 2.29 0.49 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 3078.00 16.86 3.61 52.74 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 6493.00 35.57 7.62 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 896.00 4.91 1.05 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 22.00 0.12 0.03 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 305.00 76.83 0.36 100.0 MRPL32-203 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 9.00 69.23 0.01 100.0 ENST00000436739 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 181.00 0.65 0.21 100.0 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 3491.00 12.61 4.10 100.0 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2522.00 9.11 2.96 69.92 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 156.00 0.56 0.18 100.0 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 2967.00 10.72 3.48 47.42 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 7070.00 30.30 8.30 100.0 SNHG16-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 13714.00 58.78 16.10 85.94 SNHG16-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 12.00 0.89 0.01 100.0 SNHG14-207 lncRNA smooth muscle cell (In vitro differentiated cells)