ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 10260.00 0.76 12.05 76.15 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 4861.00 0.36 5.71 68.93 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 2442.00 0.18 2.87 84.32 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 4557.00 0.34 5.35 73.77 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 580.00 0.04 0.68 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 1049296.00 77.27 1231.87 99.1 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 5351.00 0.39 6.28 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1559.00 0.11 1.83 44.82 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 4268.00 0.31 5.01 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 43.00 0.00 0.05 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4307.00 0.32 5.06 89.67 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 77984.00 98.13 91.55 100.0 RPS8-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 2474.00 48.14 2.90 100.0 RPL7A-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 143.00 2.78 0.17 100.0 RPL7A-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 497.00 9.67 0.58 100.0 RPL7A-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1295680.00 81.39 1521.13 98.8 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 67.00 0.00 0.08 100.0 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2196.00 0.14 2.58 100.0 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1297.00 0.08 1.52 100.0 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 285386.00 17.93 335.04 99.25 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 199.00 37.06 0.23 100.0 GABRE-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 698.00 0.12 0.82 53.04 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 465959.00 77.86 547.04 98.63 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 19.00 0.00 0.02 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1447.00 0.24 1.70 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)