ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 2379.00 97.42 2.79 99.75 MIRLET7F2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 30.00 51.72 0.04 100.0 MIR652-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 2.00 100.00 0.00 100.0 MIR653-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 798.00 75.93 0.94 100.0 MIR140-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 85.00 23.16 0.10 100.0 MIR106B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 44.00 11.99 0.05 70.97 MIR106B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 366938.00 57.30 430.79 97.46 SNORD83A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 261608.00 40.85 307.13 96.9 SNORD83A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 21367.00 75.66 25.08 100.0 SNORD41-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 10.00 1.53 0.01 50.0 MT-TF-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 62.00 9.48 0.07 100.0 MT-TF-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 42.00 6.42 0.05 51.22 MT-TF-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 510.00 11.65 0.60 100.0 MT-TV-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 865.00 3.49 1.02 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 51.00 0.21 0.06 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 1952.00 7.88 2.29 80.33 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 293.00 1.18 0.34 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 3785.00 15.28 4.44 91.98 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 37.00 0.15 0.04 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 52.00 0.21 0.06 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 438.00 12.91 0.51 88.48 MT-TI-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 1424.00 41.98 1.67 100.0 MT-TI-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 293.00 4.26 0.34 100.0 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 1742.00 25.32 2.05 81.14 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 661.61 9.62 0.78 65.31 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)