ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 35.00 4.31 0.04 100.0 MIR500A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 631.00 77.71 0.74 100.0 MIR500A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 887.00 4.46 1.04 100.0 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 230.00 1.16 0.27 100.0 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 468.00 2.36 0.55 77.61 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 18011.00 90.65 21.14 99.26 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 128067.00 89.20 150.35 92.77 MIR27B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 854.00 0.59 1.00 100.0 MIR27B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 219.00 76.31 0.26 100.0 MIR196A2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 1.00 100.00 0.00 100.0 MIR577-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 216.00 68.57 0.25 82.13 MIR654-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 65.00 81.25 0.08 85.53 MIR204-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 3224.00 90.31 3.78 100.0 MIR152-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 5.00 83.33 0.01 100.0 MIR138-1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 1752.00 90.82 2.06 100.0 MIR30C1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 127.00 84.67 0.15 100.0 MIR660-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 16788.00 74.32 19.71 94.62 MIR125B1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 3154.00 13.96 3.70 100.0 MIR125B1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 2.00 50.00 0.00 100.0 MIR493-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 6194.34 20.31 7.27 24.93 MIR182-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 22454.22 73.62 26.36 77.58 MIR182-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 22021.00 95.94 25.85 97.24 MIR100-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 2633.00 94.75 3.09 100.0 MIR301A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 4436.00 55.83 5.21 68.72 MIR130A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 3447.00 43.39 4.05 73.36 MIR130A-201 miRNA smooth muscle cell (In vitro differentiated cells)