ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 1487.00 0.23 7.25 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 570.00 0.09 2.78 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 178.00 0.03 0.87 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3659.00 0.57 17.83 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 3.00 0.00 0.01 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 192.00 0.03 0.94 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1462.00 0.23 7.12 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 3817.00 0.60 18.60 83.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 3477.00 0.55 16.94 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 44.00 0.01 0.21 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 192.00 0.03 0.94 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2901.00 0.46 14.13 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 182640.00 28.65 889.88 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 167.00 22.42 0.81 100.0 FTX-219 lncRNA stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 355.00 47.65 1.73 92.93 FTX-219 lncRNA stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 350.00 4.18 1.71 64.22 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 302.00 3.60 1.47 89.09 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 2986.00 35.63 14.55 87.28 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 195.00 2.33 0.95 35.78 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1036.00 12.36 5.05 61.41 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 276.00 3.29 1.34 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 353.00 4.21 1.72 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 120.00 1.43 0.58 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 273.00 1.28 1.33 62.47 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 870.00 4.08 4.24 93.65 ENST00000651540 lncRNA stomach (Tissue)