ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 34823.00 97.92 169.67 98.42 MIR22HG-212 lncRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 115.00 27.25 0.56 34.23 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 221.00 52.37 1.08 65.77 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 162.00 80.20 0.79 100.0 ENST00000578036 lncRNA stomach (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 515.00 86.55 2.51 100.0 RPL23A-207 protein coding stomach (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 368.00 92.00 1.79 100.0 MIR744-201 miRNA stomach (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 275.00 72.37 1.34 100.0 MIR378C-201 miRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1557.00 74.57 7.59 80.13 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 3.00 0.14 0.01 100.0 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 23.00 1.10 0.11 3.49 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 419.84 0.05 2.05 57.51 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 303.46 0.04 1.48 51.61 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 646083.00 79.76 3147.93 87.82 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 159561.00 19.70 777.43 92.95 RPL23A-208 retained intron stomach (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 88.00 2.69 0.43 100.0 MIR133A1HG-202 lncRNA stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2838.00 4.79 13.83 57.87 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 6508.00 10.99 31.71 54.15 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 451.00 0.76 2.20 100.0 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 33891.00 57.26 165.13 95.19 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 13067.00 22.08 63.67 94.93 RPL17-211 retained intron stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 105.00 31.53 0.51 36.97 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2.00 0.60 0.01 100.0 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 7.00 2.10 0.03 100.0 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1282.00 9.98 6.25 100.0 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 4972.73 38.72 24.23 49.61 RPL17-214 retained intron stomach (Tissue)