ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 502.00 7.79 2.45 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 2425.00 37.63 11.82 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 166.00 0.34 0.81 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 820.00 1.68 4.00 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 46287.00 95.06 225.53 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 51.00 0.10 0.25 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1200.00 99.09 5.85 100.0 TEKT4P2-201 transcribed unprocessed pseudogene stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 27592.00 86.27 134.44 94.19 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 652.00 2.04 3.18 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 335.00 1.05 1.63 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 89.00 0.28 0.43 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 512.00 0.26 2.49 100.0 ENST00000563103 lncRNA stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1518.00 45.04 7.40 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 456.00 13.53 2.22 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 13704.00 3.20 66.77 84.54 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 406631.00 94.92 1981.24 99.17 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 103.00 0.81 0.50 15.65 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 4174.00 32.76 20.34 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3218.00 25.26 15.68 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 163.00 16.53 0.79 100.0 RPL4-214 retained intron stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 813.00 1.21 3.96 100.0 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 44172.23 65.69 215.22 83.8 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 7675.39 11.41 37.40 14.79 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1940.00 52.63 9.45 100.0 ENST00000570843 lncRNA stomach (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 7049.00 88.15 34.35 100.0 MIR497HG-207 lncRNA stomach (Tissue)