ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 5961.72 46.42 29.05 54.86 RPL17-214 retained intron stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 207444.00 98.57 1010.74 99.95 SNORD43-201 snoRNA stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 33.00 0.02 0.16 100.0 SNORD43-201 snoRNA stomach (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 73.00 38.42 0.36 100.0 MIR151B-201 miRNA stomach (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 2.00 0.08 0.01 100.0 SNORD3A-201 snoRNA stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2096.00 51.23 10.21 100.0 NSRP1-214 protein coding stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1081.00 26.42 5.27 69.65 NSRP1-214 protein coding stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 4597.00 33.64 22.40 95.91 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1177.00 8.61 5.73 79.85 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3230.00 23.63 15.74 88.28 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 2389.00 17.48 11.64 83.8 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 1.00 50.00 0.00 100.0 MIR122HG-201 lncRNA stomach (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 11.00 9.73 0.05 100.0 ODAD3-204 nonsense mediated decay stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2288.00 5.04 11.15 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 92.00 0.20 0.45 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 28196.00 62.12 137.38 71.1 VMP1-217 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 228.00 26.06 1.11 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 38.00 4.34 0.19 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 5764475.00 71.13 28086.43 72.74 CARMN-209 lncRNA stomach (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 845.00 62.41 4.12 100.0 PPFIA1P1-201 processed pseudogene stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 733.00 35.63 3.57 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1004.00 48.81 4.89 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 7790.00 97.83 37.96 100.0 MIR98-201 miRNA stomach (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 111.00 58.12 0.54 100.0 SNORD113-5-201 snoRNA stomach (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 120.00 93.75 0.58 100.0 MIR15A-201 miRNA stomach (Tissue)